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PROTEOMIC ANALYSIS OF PLASMA FROM RHEUMATOID ARTHRITIS PATIENTS WITH MILD COGNITIVE IMPAIRMENT

Abstract Rheumatoid arthritis patients may suffer from comorbid neuropsychiatric symptoms including mild cognitive impairment. Although...

QUANTIFYING TUMOR-INFILTRATING IMMUNE CELLS FROM TRANSCRIPTOMICS DATA

Abstract By exerting pro- and anti-tumorigenic actions, tumor-infiltrating immune cells can profoundly influence tumor progression,...

 
 
 

FUNCTIONAL ASSIGNMENT OF MULTIPLE CATABOLIC PATHWAYS FOR D -APIOSE

Functional assignment of multiple catabolic pathways for d-apiose Functional assignment of multiple catabolic pathways for d -apiose,...

DINCRNA: A COMPREHENSIVE WEB-BASED BIOINFORMATICS TOOLKIT FOR EXPLORING DISEASE ASSOCIATIONS AND NCRNA FUNCTION

AbstractSummaryDincRNA aims to provide a comprehensive web-based bioinformatics toolkit to elucidate the entangled relationships among...

 
 
 

SEQUANIX: A DYNAMIC GRAPHICAL INTERFACE FOR SNAKEMAKE WORKFLOWS

AbstractSummaryWe designed a PyQt graphical user interface-Sequanix-aimed at democratizing the use of Snakemake pipelines in the NGS...

PRIMER3 MASKER: INTEGRATING MASKING OF TEMPLATE SEQUENCE WITH PRIMER DESIGN SOFTWARE

AbstractSummaryDesigning PCR primers for amplifying regions of eukaryotic genomes is a complicated task because the genomes contain...

 
 
 

BIOINFORMATICS ANALYSIS OF SINGLE AND MULTI-HYBRID EPITOPES OF GRA-1, GRA-4, GRA-6 AND GRA-7 PROTEINS TO IMPROVE DNA VACCINE DESIGN AGAINST TOXOPLASMA GONDII

Abstract Toxoplasma gondii , is a causative agent of morbidity and mortality in immunocompromised and congenitally-infected individuals....

A Need for Speed: Illumina Acquires San Diego's Edico Genome

A NEED FOR SPEED: ILLUMINA ACQUIRES SAN DIEGO'S EDICO GENOME

With the Bio-IT World Conference opening today in Boston, San Diego-based Illumina said it has acquired Edico Genome, a five-year-old...

 
 
 

DIFFERENCES IN TYPE I INTERFERON RESPONSE IN HUMAN LUNG EPITHELIAL CELLS INFECTED BY HIGHLY PATHOGENIC H5N1 AND LOW PATHOGENIC H11N1 AVIAN INFLUENZA VIRUSES

Abstract Influenza A virus infection induces type I interferons which activate host antiviral responses through a cascade of IFN signaling...

TRANSLATIONAL REGULATION OF RIBOSOMAL PROTEIN S15 DRIVES CHARACTERISTIC PATTERNS OF PROTEIN‐MRNA EPISTASIS

Proteins: Structure, Function, and Bioinformatics, EarlyView.

 
 
 
Introduction of the Iso-Seq Method: State of the Art for Full-Length Transcriptome Sequencing

INTRODUCTION OF THE ISO-SEQ METHOD: STATE OF THE ART FOR FULL-LENGTH TRANSCRIPTOME SEQUENCING

Photo by John Cobb on Unsplash In eukaryotic organisms, the majority of genes are alternatively spliced to produce multiple transcript...

STRUCTURAL EFFECTS OF POINT MUTATIONS IN PROTEINS

Proteins: Structure, Function, and Bioinformatics, EarlyView.

 
 
 

A NOVEL APPROACH BASED ON KATZ MEASURE TO PREDICT ASSOCIATIONS OF HUMAN MICROBIOTA WITH NON-INFECTIOUS DISEASES

Bioinformatics (2017) 33 (5): 733-739.

SIMULATE: SIMULATING COMPLEX LANDSCAPES OF TRANSPOSABLE ELEMENTS OF POPULATIONS

Bioinformatics (2017) DOI

 
 
 
Procrastinators' Special! Save on Big Data Meets Big Biology 4/26

PROCRASTINATORS' SPECIAL! SAVE ON BIG DATA MEETS BIG BIOLOGY 4/26

The countdown clock is running for Big Data Meets Big Biology , and time is almost up to grab a seat for Xconomy's half-day forum that...

IN SILICO CHARACTERIZATION AND STRUCTURAL MODELING OF DERMACENTOR ANDERSONI P36 IMMUNOSUPPRESSIVE PROTEIN

Ticks cause approximately $17-19 billion economic losses to the livestock industry globally. Development of recombinant antitick vaccine...

 
 
 

SCAFFOLDING PROBLEMS REVISITED: COMPLEXITY, APPROXIMATION AND FIXED PARAMETER TRACTABLE ALGORITHMS, AND SOME SPECIAL CASES

Abstract This paper is devoted to new results about the scaffolding problem, an integral problem of genome inference in bioinformatics....

THE ROLE OF NEGATIVE SELECTION IN PROTEIN EVOLUTION REVEALED THROUGH THE ENERGETICS OF THE NATIVE SATE ENSEMBLE

Proteins: Structure, Function, and Bioinformatics, EarlyView.

 
 
 

SPIN2: PREDICTING SEQUENCE PROFILES FROM PROTEIN STRUCTURES USING DEEP NEURAL NETWORKS

Proteins: Structure, Function, and Bioinformatics, EarlyView.

LARGE SCALE AB INITIO MODELING OF STRUCTURALLY UNCHARACTERIZED ANTIMICROBIAL PEPTIDES REVEALS KNOWN AND NOVEL FOLDS

Proteins: Structure, Function, and Bioinformatics, EarlyView.